| # | SP/EP Title | Release Date | Label | UK | USA |
| 1. | Lost Is Found EP
(Nature Is Synthetic / Lover Lover ("Hate Is Love" mix) / Feminine Is Masculine) | 20.11.2000 | Superbra | | |
| 2. | Everywhere Is Nowhere EP
(Everywhere Is Nowhere / Blindness Is Sight / Push Is Hush / Confinement Is Freedom) | 26.02.2001 | Good Life | | |
| 3. | Monoid 25 EP
(Laughing Is Crying / Crying Is Laughing / Dark Is Light /I Am You) | 07.05.2001 | Monoid | | |
| 4. | Shit | 08.10.2001 | Malec | | |
| 5. | Back To The Start EP
(Tha Funk / Bungalow / Way You Like It / Lovin') | 29.10.2001 | Superbra | | |
| 6. | Tha Way You Like It
presents S**t | 19.11.2001 | Tide | | |
| 7. | Terminal M Label Compilation Volume One (Sampler 2) (Rodeo / Kowloon / V2)
& WJ Henze / G Man | 07.01.2002 | Terminal M | | |
| 8. | Good Life Compilation Vol 1 (Last Test Part 1 (re-works) /Satisfy /Freaky Games)
& Eric Borgo & Oxia & The Hacker | 24.06.2002 | Good Life | | |
| 9. | Lusaka EP
(Lusaka Part 1 / Montamba / Polo / Lusaka Part 2) | 22.07.2002 | Monoid | | |
| 10. | U Think Love Can Save U?
& Lamonde | 30.09.2002 | Terminal M | | |
| 11. | Len Series: Figure EP
(Figure 1.1 / Figure 1.2 / Figure 1.3 / Figure 1.4) | 17.02.2003 | Figure | | |
| 12. | Figure 2.1 / 2.2 / 2.3 | 31.05.2004 | Figure | | |
| 13. | Figure 3 (Just A Dance (Part 1) / Just A Dance (Part 2)) | 16.08.2004 | Figure | | |
| 14. | Just A Dance (remixes) | 14.03.2005 | Figure | | |
| 15. | Just A Dance: The Re-Interpretation Part 2 (Just A Dance (Alexander Kowalski mix) / Just A Dance (Carl Cox mix)) | 04.07.2005 | Figure | | |
| 16. | The B-East Roller | 29.08.2005 | Figure | | |
| 17. | The B-East Roller Instrumentals | 26.06.2006 | Figure | | |
| 18. | Amsterdam Meets Berlin / Die Rumpelkammer
& Shinedoe | 04.09.2006 | Podium | | |
| 19. | Work / Odyssee I
& 2000 And One | 24.09.2007 | Podium | | |
| 20. | My Black Sheep / My Blackappella | 22.10.2007 | Figure | | |
| 21. | What's On A Moog's Mind? / Odyssee II
& Redshape | 05.11.2007 | Podium | | |
| 22. | My Black Sheep: Interpretations 2 / 2 | 14.04.2008 | Figure | | |
| 23. | Berghain 03 Part II
(Bauer / BX 3)
& Edit Select | 26.04.2009 | Ostgut Ton | | |
| 24. | Death By House (A Mochi remix, Adam Beyer & Jesper Dahlback remix) | 16.09.2009 | Cocoon | | |
| 25. | Len Faki DJ Edits Volume 1 EP
(Wide Open (Len Faki re-edit) / Rx Tribe (Len Faki re-edit))
& DJ Hyperactive | 02.08.2012 | Figure | | |
| 26. | Basement Trax Vol 1 EP
(Btx1 / Btx2 / Btx3) | 21.02.2013 | Ostgut Ton | | |
| 27. | John Digweed Live In Slovenia Vinyl 4/4 EP
(BTX2 / Bully / On Tides)
& Dubspeeka & Petrichor | 30.05.2013 | Bedrock | | |
| 28. | The Octopuss / Karter Bachnabel
& Johannes Heil | 18.07.2013 | Figure | | |
| 29. | Dirty / Maniac
& Johannes Heil | 14.11.2013 | Figure | | |
| 30. | Skulls
& Markus Suckut | 16.01.2014 | Figure | | |
| 31. | Berghain 03 Part II EP
(Bauer / BX 3)
& Edit Select | 27.02.2014 | Ostgut Ton | | |
| 32. | Figure 54 EP
(Asua / Stripped / Truck)
vs Roman Poncet | 25.04.2014 | Figure | | |
| 33. | V3 EP
(Perception / Happy 808 / Perception (acappella))
& Johannes Heil | 22.05.2014 | Figure | | |
| 34. | Basement Trax Vol 1 EP
(Btx1 / Btx2 / Btx3) | 29.05.2014 | Ostgut Ton | | |
| 35. | Len Faki DJ Edits Volume III EP
(Jacknife / Boombox) | 30.07.2014 | Figure | | |
| 36. | Basement Trax Vol 2 EP
(B-PAX / For Real / Hainish Cycle) | 18.06.2015 | Ostgut Ton | | |
| 37. | Street Dub | 01.10.2015 | Figure | | |
